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Update modules/rtgtools/vcfeval/main.nf

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Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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nvnieuwk 2022-05-10 12:22:49 +02:00 committed by GitHub
parent ef4857ec54
commit 29f2d3c284
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1 changed files with 8 additions and 5 deletions
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modules/rtgtools/vcfeval/main.nf
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@ -15,11 +15,14 @@ process RTGTOOLS_VCFEVAL {
path(sdf) path(sdf)
output: output:
tuple val(meta), path("done"), path("progress"), path("*.log") , emit: logs tuple val(meta), path("**{done,progress,.log}") , emit: logs
tuple val(meta), path("*{tp,fn,fp,baseline}.vcf.gz.tbi"), path("*{tp,fn,fp,baseline}.vcf.gz") , emit: vcf tuple val(meta), path("**tp.vcf.gz"), path("**tp.vcf.gz.tbi") , emit: tp
tuple val(meta), path("*.tsv.gz") , emit: roc tuple val(meta), path("**fn.vcf.gz"), path("**fn.vcf.gz.tbi") , emit: fn
tuple val(meta), path("summary.txt") , emit: summary tuple val(meta), path("**fp.vcf.gz"), path("**fp.vcf.gz.tbi") , emit: fp
tuple val(meta), path("phasing.txt") , emit: phasing tuple val(meta), path("**baseline.vcf.gz"), path("**baseline.vcf.gz.tbi") , emit: baseline
tuple val(meta), path("**.tsv.gz") , emit: roc
tuple val(meta), path("**summary.txt") , emit: summary
tuple val(meta), path("**phasing.txt") , emit: phasing
path "versions.yml" , emit: versions path "versions.yml" , emit: versions
when: when: