updated the version of delly (#2105)

modules/delly/call/main.nf

@@ -2,10 +2,10 @@ process DELLY_CALL {
     tag "$meta.id"
     label 'process_medium'
 
-    conda (params.enable_conda ? "bioconda::delly=1.1.3" : null)
+    conda (params.enable_conda ? "bioconda::delly=1.1.5" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/delly:1.1.3--h358d541_0' :
-        'quay.io/biocontainers/delly:1.1.3--h358d541_0' }"
+        'https://depot.galaxyproject.org/singularity/delly:1.1.5--h358d541_0' :
+        'quay.io/biocontainers/delly:1.1.5--h358d541_0' }"
 
     input:
     tuple val(meta), path(input), path(input_index), path(exclude_bed)

tests/modules/delly/call/test.yml

@@ -1,32 +1,32 @@
 - name: delly call test_delly_call_bam
-  command: nextflow run ./tests/modules/delly/call -entry test_delly_call_bam -c ./tests/config/nextflow.config -c ./tests/modules/delly/call/nextflow.config
+  command: nextflow run ./tests/modules/delly/call -entry test_delly_call_bam -c ./tests/config/nextflow.config  -c ./tests/modules/delly/call/nextflow.config
   tags:
     - delly
     - delly/call
   files:
     - path: output/delly/test.bcf
-      md5sum: b5cdb79b69c8254d22fb69173437f9c7
+      md5sum: 82be17d3b18b80ef5f37627bb579b07b
     - path: output/delly/test.bcf.csi
       md5sum: c198abfc14584c5ac69c004057927e0b
 
 - name: delly call test_delly_call_cram
-  command: nextflow run ./tests/modules/delly/call -entry test_delly_call_cram -c ./tests/config/nextflow.config -c ./tests/modules/delly/call/nextflow.config
+  command: nextflow run ./tests/modules/delly/call -entry test_delly_call_cram -c ./tests/config/nextflow.config  -c ./tests/modules/delly/call/nextflow.config
   tags:
     - delly
     - delly/call
   files:
     - path: output/delly/test.bcf
-      md5sum: 64980a713438f39d14cffa8458b6a184
+      md5sum: 4f6ae6b5800ae824ba35674f2903cd5c
     - path: output/delly/test.bcf.csi
       md5sum: 19e0cdf06c415f4942f6d4dbd5fb7271
 
 - name: delly call test_delly_call_exclude_regions
-  command: nextflow run ./tests/modules/delly/call -entry test_delly_call_exclude_regions -c ./tests/config/nextflow.config -c ./tests/modules/delly/call/nextflow.config
+  command: nextflow run ./tests/modules/delly/call -entry test_delly_call_exclude_regions -c ./tests/config/nextflow.config  -c ./tests/modules/delly/call/nextflow.config
   tags:
     - delly
     - delly/call
   files:
     - path: output/delly/test.bcf
-      md5sum: 64980a713438f39d14cffa8458b6a184
+      md5sum: 4f6ae6b5800ae824ba35674f2903cd5c
     - path: output/delly/test.bcf.csi
       md5sum: 19e0cdf06c415f4942f6d4dbd5fb7271