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updated the version of delly (#2105)

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nvnieuwk 2022-09-27 08:57:36 +02:00 committed by GitHub
parent 5d8edefb26
commit 2a9a8763f9
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2 changed files with 9 additions and 9 deletions
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6
modules/delly/call/main.nf
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@ -2,10 +2,10 @@ process DELLY_CALL {
tag "$meta.id" tag "$meta.id"
label 'process_medium' label 'process_medium'
conda (params.enable_conda ? "bioconda::delly=1.1.3" : null) conda (params.enable_conda ? "bioconda::delly=1.1.5" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/delly:1.1.3--h358d541_0' : 'https://depot.galaxyproject.org/singularity/delly:1.1.5--h358d541_0' :
'quay.io/biocontainers/delly:1.1.3--h358d541_0' }" 'quay.io/biocontainers/delly:1.1.5--h358d541_0' }"
input: input:
tuple val(meta), path(input), path(input_index), path(exclude_bed) tuple val(meta), path(input), path(input_index), path(exclude_bed)

12
tests/modules/delly/call/test.yml
View file

@ -1,32 +1,32 @@
- name: delly call test_delly_call_bam - name: delly call test_delly_call_bam
command: nextflow run ./tests/modules/delly/call -entry test_delly_call_bam -c ./tests/config/nextflow.config -c ./tests/modules/delly/call/nextflow.config command: nextflow run ./tests/modules/delly/call -entry test_delly_call_bam -c ./tests/config/nextflow.config -c ./tests/modules/delly/call/nextflow.config
tags: tags:
- delly - delly
- delly/call - delly/call
files: files:
- path: output/delly/test.bcf - path: output/delly/test.bcf
md5sum: b5cdb79b69c8254d22fb69173437f9c7 md5sum: 82be17d3b18b80ef5f37627bb579b07b
- path: output/delly/test.bcf.csi - path: output/delly/test.bcf.csi
md5sum: c198abfc14584c5ac69c004057927e0b md5sum: c198abfc14584c5ac69c004057927e0b
- name: delly call test_delly_call_cram - name: delly call test_delly_call_cram
command: nextflow run ./tests/modules/delly/call -entry test_delly_call_cram -c ./tests/config/nextflow.config -c ./tests/modules/delly/call/nextflow.config command: nextflow run ./tests/modules/delly/call -entry test_delly_call_cram -c ./tests/config/nextflow.config -c ./tests/modules/delly/call/nextflow.config
tags: tags:
- delly - delly
- delly/call - delly/call
files: files:
- path: output/delly/test.bcf - path: output/delly/test.bcf
md5sum: 64980a713438f39d14cffa8458b6a184 md5sum: 4f6ae6b5800ae824ba35674f2903cd5c
- path: output/delly/test.bcf.csi - path: output/delly/test.bcf.csi
md5sum: 19e0cdf06c415f4942f6d4dbd5fb7271 md5sum: 19e0cdf06c415f4942f6d4dbd5fb7271
- name: delly call test_delly_call_exclude_regions - name: delly call test_delly_call_exclude_regions
command: nextflow run ./tests/modules/delly/call -entry test_delly_call_exclude_regions -c ./tests/config/nextflow.config -c ./tests/modules/delly/call/nextflow.config command: nextflow run ./tests/modules/delly/call -entry test_delly_call_exclude_regions -c ./tests/config/nextflow.config -c ./tests/modules/delly/call/nextflow.config
tags: tags:
- delly - delly
- delly/call - delly/call
files: files:
- path: output/delly/test.bcf - path: output/delly/test.bcf
md5sum: 64980a713438f39d14cffa8458b6a184 md5sum: 4f6ae6b5800ae824ba35674f2903cd5c
- path: output/delly/test.bcf.csi - path: output/delly/test.bcf.csi
md5sum: 19e0cdf06c415f4942f6d4dbd5fb7271 md5sum: 19e0cdf06c415f4942f6d4dbd5fb7271