From 2cd502a236aec1a1eecbe1f9189af3414efbf1d8 Mon Sep 17 00:00:00 2001 From: Michael J Cipriano <42848032+mjcipriano@users.noreply.github.com> Date: Wed, 2 Mar 2022 08:27:38 -0500 Subject: [PATCH] Faqcs patch (#1367) * faqcs update to capture debug output * change paths Co-authored-by: Cipriano --- modules/faqcs/main.nf | 1 + modules/faqcs/meta.yml | 4 ++++ 2 files changed, 5 insertions(+) diff --git a/modules/faqcs/main.nf b/modules/faqcs/main.nf index a03a0150..24f81a95 100644 --- a/modules/faqcs/main.nf +++ b/modules/faqcs/main.nf @@ -13,6 +13,7 @@ process FAQCS { output: tuple val(meta), path('*.trimmed.fastq.gz') , emit: reads tuple val(meta), path('*.stats.txt') , emit: stats + tuple val(meta), path('*.txt') , optional:true, emit: txt tuple val(meta), path('*_qc_report.pdf') , optional:true, emit: statspdf tuple val(meta), path('*.log') , emit: log tuple val(meta), path('*.discard.fastq.gz') , optional:true, emit: reads_fail diff --git a/modules/faqcs/meta.yml b/modules/faqcs/meta.yml index eca35e65..1161a13d 100644 --- a/modules/faqcs/meta.yml +++ b/modules/faqcs/meta.yml @@ -54,6 +54,10 @@ output: type: file description: trimming/qc text stats file pattern: "*.stats.txt" + - txt: + type: file + description: trimming/qc text txt files from --debug option + pattern: "*.txt" - statspdf: type: file description: trimming/qc pdf report file