From 2d26b037a11190e65a060ac5c6809a458ff5536b Mon Sep 17 00:00:00 2001
From: "James A. Fellows Yates" <jfy133@gmail.com>
Date: Wed, 21 Jul 2021 15:51:33 +0200
Subject: [PATCH] (another) fix: picard sortsam (#606)

* Add picard/sortsam module

* Fix container links

* Changes after code review

* Input meta in the right place

* Correct output file suffix

* Define only `bam` in output tuple

* Correct output meta

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
---
 modules/picard/sortsam/meta.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/modules/picard/sortsam/meta.yml b/modules/picard/sortsam/meta.yml
index ea4b2c89..42de6eab 100644
--- a/modules/picard/sortsam/meta.yml
+++ b/modules/picard/sortsam/meta.yml
@@ -40,7 +40,7 @@ output:
   - bam:
       type: file
       description: Sorted BAM/CRAM/SAM file
-      pattern: "*sorted.{bam}"
+      pattern: "*.{bam}"
 
 
 authors: