diff --git a/.github/workflows/phantompeakqualtools.yml b/.github/workflows/phantompeakqualtools.yml
deleted file mode 100644
index 3663b6ef..00000000
--- a/.github/workflows/phantompeakqualtools.yml
+++ /dev/null
@@ -1,40 +0,0 @@
-name: phantompeakqualtools
-on:
-  push:
-    paths:
-      - software/phantompeakqualtools/**
-      - .github/workflows/phantompeakqualtools.yml
-      - tests/software/phantompeakqualtools/**
-  pull_request:
-    paths:
-      - software/phantompeakqualtools/**
-      - .github/workflows/phantompeakqualtools.yml
-      - tests/software/phantompeakqualtools/**
-
-jobs:
-  ci_test:
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        nxf_version: [20.07.1, ""]
-    env:
-      NXF_ANSI_LOG: false
-    steps:
-      - uses: actions/checkout@v2
-
-      - name: Install Nextflow
-        env:
-          NXF_VER: ${{ matrix.nxf_version }}
-        run: |
-          wget -qO- get.nextflow.io | bash
-          sudo mv nextflow /usr/local/bin/
-
-      - name: Set up Python
-        uses: actions/setup-python@v2
-        with:
-          python-version: "3.x"
-      - name: Install dependencies
-        run: python -m pip install --upgrade pip pytest-workflow
-
-      # Test the module
-      - run: pytest --tag phantompeakqualtools --symlink --wt 2