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Update modules/bamtools/split/main.nf

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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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Matthias De Smet 2022-04-22 19:36:01 +02:00 committed by GitHub
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1 changed files with 7 additions and 5 deletions
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modules/bamtools/split/main.nf
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@ -24,10 +24,12 @@ process BAMTOOLS_SPLIT {
def stub = !args.contains("-stub") ? "-stub ${prefix}" : "" def stub = !args.contains("-stub") ? "-stub ${prefix}" : ""
""" """
bamtools merge \\ bamtools \\
${input_list} \\ merge \\
| bamtools split \\ $input_list \\
$stub \\ | bamtools \\
split \\
-stub $prefix \\
$args $args
cat <<-END_VERSIONS > versions.yml cat <<-END_VERSIONS > versions.yml