millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 11:08:17 +00:00
Code Issues Releases Packages Activity

Update modules/bamtools/split/main.nf

Browse source 
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
This commit is contained in:
Matthias De Smet 2022-04-22 19:36:01 +02:00 committed by GitHub
parent e9c44f3d85
commit 2d32267fcd
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 7 additions and 5 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

12
modules/bamtools/split/main.nf
View file

@ -24,11 +24,13 @@ process BAMTOOLS_SPLIT {
def stub = !args.contains("-stub") ? "-stub ${prefix}" : "" def stub = !args.contains("-stub") ? "-stub ${prefix}" : ""
""" """
bamtools merge \\ bamtools \\
${input_list} \\ merge \\
| bamtools split \\ $input_list \\
$stub \\ | bamtools \\
$args split \\
-stub $prefix \\
$args
cat <<-END_VERSIONS > versions.yml cat <<-END_VERSIONS > versions.yml
"${task.process}": "${task.process}":