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corrected yaml version file

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veitveit 2022-01-20 12:10:49 +01:00
parent 6baf6cf3fd
commit 2d48ca13ba
1 changed files with 1 additions and 1 deletions
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modules/maxquant/lfq/main.nf
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@ -23,7 +23,7 @@ process MAXQUANT_LFQ {
"""
export PATH=/usr/local/lib/dotnet:/usr/local/lib/dotnet/tools:/opt/conda/envs/nf-core-maxquant/bin:/opt/conda/envs/nf-core-maxquant/lib/dotnet/tools:/opt/conda/envs/nf-core-maxquant/lib/dotnet:$PATH
echo "maxquant: \$(maxquant --version 2> versions.yml)"
echo \"maxquant: \"\$(maxquant --version 2>&1 > /dev/null | cut -f2 -d\" \") > versions.yml
sed \"s_<numThreads>.*_<numThreads>$task.cpus</numThreads>_\" ${paramfile} > mqpar_changed.xml
sed -i \"s|PLACEHOLDER|\$PWD/|g\" mqpar_changed.xml
mkdir temp