diff --git a/software/appyter/main.nf b/software/appyter/main.nf index ba7ffab6..af52cd6f 100644 --- a/software/appyter/main.nf +++ b/software/appyter/main.nf @@ -5,11 +5,10 @@ params.options = [:] options = initOptions(params.options) process APPYTER { - tag "$meta.id" label 'process_medium' publishDir "${params.outdir}", mode: params.publish_dir_mode, - saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } + saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process)) } // FIXME These rely on docker and won't work with conda // conda (params.enable_conda ? "bioconda::fastqc=0.11.9" : null) @@ -29,7 +28,6 @@ process APPYTER { script: // Add soft-links to original FastQs for consistent naming in pipeline def software = getSoftwareName(task.process) - def prefix = options.suffix ? "${meta.id}.${options.suffix}" : "${meta.id}" """ appyter nbconstruct -i $input -o data/output.ipynb