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test(fastqc): Remove input symlinks

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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
This commit is contained in:
Edmund Miller 2020-11-24 14:16:20 -06:00 • committed by Edmund Miller
parent 1fd97e8804
commit 2e56022e31
4 changed files with 2 additions and 5 deletions
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1
tests/fastqc/input/test_R1.fastq.gz
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@ -1 +0,0 @@
../../../../tests/data/fastq/rna/test_R1.fastq.gz

1
tests/fastqc/input/test_R2.fastq.gz
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@ -1 +0,0 @@
../../../../tests/data/fastq/rna/test_R2.fastq.gz

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tests/fastqc/input/test_single_end.fastq.gz
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@ -1 +0,0 @@
../../data/fastq/rna/test_single_end.fastq.gz

4
tests/fastqc/main.nf
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@ -12,7 +12,7 @@ workflow test_single_end {
def input = [] def input = []
input = [ [ id:'test', single_end:true ], // meta map input = [ [ id:'test', single_end:true ], // meta map
[ file("${projectDir}/input/test_single_end.fastq.gz", checkIfExists: true) ] ] [ file("${launchDir}/tests/data/fastq/rna/test_single_end.fastq.gz", checkIfExists: true) ] ]
FASTQC_SE ( input ) FASTQC_SE ( input )
} }
@ -25,7 +25,7 @@ workflow test_paired_end {
def input = [] def input = []
input = [ [ id:'test', single_end:false ], // meta map input = [ [ id:'test', single_end:false ], // meta map
[ file("${launchDir}/tests/data/fastq/rna/test_R1.fastq.gz", checkIfExists: true), [ file("${launchDir}/tests/data/fastq/rna/test_R1.fastq.gz", checkIfExists: true),
file("${projectDir}/../data/fastq/rna/test_R2.fastq.gz", checkIfExists: true) ] ] file("${launchDir}/tests/data/fastq/rna/test_R2.fastq.gz", checkIfExists: true) ] ]
FASTQC_PE ( input ) FASTQC_PE ( input )
} }