From 2e5aa0dbb45632072cbe862985e0e4ff50c55867 Mon Sep 17 00:00:00 2001 From: SusiJo <43847534+SusiJo@users.noreply.github.com> Date: Fri, 20 May 2022 13:08:26 +0200 Subject: [PATCH] refine comment Co-authored-by: FriederikeHanssen --- modules/cnvkit/batch/main.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/cnvkit/batch/main.nf b/modules/cnvkit/batch/main.nf index 63482c6c..55e3ee6b 100644 --- a/modules/cnvkit/batch/main.nf +++ b/modules/cnvkit/batch/main.nf @@ -31,7 +31,7 @@ process CNVKIT_BATCH { // input pair is assumed to have same extension if both exist def is_cram = tumor.Extension == "cram" ? true : false def tumor_out = is_cram ? tumor.BaseName + ".bam" : "${tumor}" - // do not run samtools on normal samples in tumor_only + // do not run samtools on normal samples in tumor_only mode def normal_exists = normal ? true: false // tumor_only mode does not need fasta & target // instead it requires a pre-computed reference which is built from fasta & target