diff --git a/modules/krona/ktimporttaxonomy/main.nf b/modules/krona/ktimporttaxonomy/main.nf index 7837bb87..4fa15669 100644 --- a/modules/krona/ktimporttaxonomy/main.nf +++ b/modules/krona/ktimporttaxonomy/main.nf @@ -23,7 +23,10 @@ process KRONA_KTIMPORTTAXONOMY { script: def args = task.ext.args ?: '' """ - ktImportTaxonomy "$report" -tax taxonomy + ktImportTaxonomy \\ + "$report" \\ + $args \\ + -tax taxonomy cat <<-END_VERSIONS > versions.yml "${task.process}":