From 2f36a44f61471ecf6bd6b047a2977d8dfe600ea8 Mon Sep 17 00:00:00 2001
From: Rike <friederike.hanssen@qbic.uni-tuebingen.de>
Date: Mon, 23 May 2022 12:00:31 +0200
Subject: [PATCH] nf-core create-test-yml

---
 .../gatk4/filtervarianttranches/test.yml      | 19 +++++++------------
 1 file changed, 7 insertions(+), 12 deletions(-)

diff --git a/tests/modules/gatk4/filtervarianttranches/test.yml b/tests/modules/gatk4/filtervarianttranches/test.yml
index 1ba2657e..a4739643 100644
--- a/tests/modules/gatk4/filtervarianttranches/test.yml
+++ b/tests/modules/gatk4/filtervarianttranches/test.yml
@@ -1,14 +1,9 @@
-## TODO nf-core: Please run the following command to build this file:
-#                nf-core modules create-test-yml gatk4/filtervarianttranches
-- name: "gatk4 filtervarianttranches"
-  command: nextflow run ./tests/modules/gatk4/filtervarianttranches -entry test_gatk4_filtervarianttranches -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/filtervarianttranches/nextflow.config
+- name: gatk4 filtervarianttranches test_gatk4_filtervarianttranches
+  command: nextflow run ./tests/modules/gatk4/filtervarianttranches -entry test_gatk4_filtervarianttranches -c ./tests/config/nextflow.config  -c ./tests/modules/gatk4/filtervarianttranches/nextflow.config
   tags:
-    - "gatk4"
-    #
-    - "gatk4/filtervarianttranches"
-    #
+    - gatk4/filtervarianttranches
+    - gatk4
   files:
-    - path: "output/gatk4/test.bam"
-      md5sum: e667c7caad0bc4b7ac383fd023c654fc
-    - path: output/gatk4/versions.yml
-      md5sum: a01fe51bc4c6a3a6226fbf77b2c7cf3b
+    - path: output/gatk4/test.filtered.vcf.gz
+    - path: output/gatk4/test.filtered.vcf.gz.tbi
+      md5sum: a7736ea2cea26420b1a86413adeefda8