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fix index omission

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This commit is contained in:
Matthias De Smet 2022-04-28 13:53:48 +02:00
parent 8ad861a645
commit 2fc857955f
1 changed files with 2 additions and 2 deletions
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subworkflows/nf-core/bam_qc_picard/main.nf
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@ -10,7 +10,7 @@ workflow BAM_QC_PICARD {
take: take:
ch_bam // channel: [ val(meta), [ bam ]] ch_bam // channel: [ val(meta), [ bam ]]
ch_fasta // channel: [ fasta ] ch_fasta // channel: [ fasta ]
ch_fasta_faix // channel: [ fasta_fai ] ch_fasta_fai // channel: [ fasta_fai ]
ch_bait_interval // channel: [ bait_interval ] ch_bait_interval // channel: [ bait_interval ]
ch_target_interval // channel: [ target_interval ] ch_target_interval // channel: [ target_interval ]
@ -28,7 +28,7 @@ workflow BAM_QC_PICARD {
if (ch_target_interval.isEmpty()) { if (ch_target_interval.isEmpty()) {
log.error("Target interval channel is empty") log.error("Target interval channel is empty")
} }
PICARD_COLLECTHSMETRICS( ch_bam, ch_fasta, [], ch_bait_interval, ch_target_interval ) PICARD_COLLECTHSMETRICS( ch_bam, ch_fasta, ch_fasta_fai, ch_bait_interval, ch_target_interval )
ch_coverage_metrics.mix(PICARD_COLLECTHSMETRICS.out.coverage_metrics.first()) ch_coverage_metrics.mix(PICARD_COLLECTHSMETRICS.out.coverage_metrics.first())
ch_versions = ch_versions.mix(PICARD_COLLECTHSMETRICS.out.versions.first()) ch_versions = ch_versions.mix(PICARD_COLLECTHSMETRICS.out.versions.first())
} else { } else {