millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 11:08:17 +00:00
Code Issues Releases Packages Activity

Update tools/bowtie2/main.nf

Browse source
This commit is contained in:
Phil Ewels 2020-07-11 13:27:05 +02:00 committed by GitHub
parent ccea438b49
commit 2fee617b5b
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 0 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

1
tools/bowtie2/main.nf
View file

@ -45,7 +45,6 @@ process BOWTIE2 {
index = params.genome["bowtie2"]
bowtie2_name = name + "_" + params.genome["name"]
println ("bowtie2 -x ${index} -p ${cores} ${bowtie2_options} ${readString} 2>${bowtie2_name}_bowtie2_stats.txt | samtools view -bS -F 4 -F 8 -F 256 -> ${bowtie2_name}_bowtie2.bam")
"""
bowtie2 -x ${index} -p ${cores} ${bowtie2_options} ${readString} 2>${bowtie2_name}_bowtie2_stats.txt | samtools view -bS -F 4 -F 8 -F 256 -> ${bowtie2_name}_bowtie2.bam
"""