millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 02:58:17 +00:00
Code Issues Releases Packages Activity

added test for metrics

Browse source
This commit is contained in:
SusiJo 2022-05-31 14:35:29 +02:00
parent e0e8273f74
commit 3117b2973c
1 changed files with 4 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

5
tests/modules/gatk4/markduplicatesspark/nextflow.config
View file

@ -2,7 +2,10 @@ process {
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
withName: GATK4_MARKDUPLICATES_SPARK_METRICS {
ext.args = '--metrics-file test.metrics'
}
}
// necessary to override tests/config/nextflow.config
// override tests/config/nextflow.config
docker.userEmulation = false