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added test for metrics

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SusiJo 2022-05-31 14:35:29 +02:00
parent e0e8273f74
commit 3117b2973c
1 changed files with 4 additions and 1 deletions
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tests/modules/gatk4/markduplicatesspark/nextflow.config
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@ -2,7 +2,10 @@ process {
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" } publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
withName: GATK4_MARKDUPLICATES_SPARK_METRICS {
ext.args = '--metrics-file test.metrics'
}
} }
// necessary to override tests/config/nextflow.config // override tests/config/nextflow.config
docker.userEmulation = false docker.userEmulation = false