mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
removed should_exist tag
This commit is contained in:
kevinmenden
parent
48c570d6ac
commit
3390f7621d
1 changed files with 0 additions and 69 deletions
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@ -6,44 +6,29 @@
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files:
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files:
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- path: ./output/salmon/salmon/info.json
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- path: ./output/salmon/salmon/info.json
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md5sum: 61ff4d3471134c280668355ddd39e99f
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md5sum: 61ff4d3471134c280668355ddd39e99f
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should_exist: true
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- path: ./output/salmon/salmon/mphf.bin
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- path: ./output/salmon/salmon/mphf.bin
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md5sum: 53669a47610e33e031faafd32703b714
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md5sum: 53669a47610e33e031faafd32703b714
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should_exist: true
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- path: ./output/salmon/salmon/complete_ref_lens.bin
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- path: ./output/salmon/salmon/complete_ref_lens.bin
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md5sum: f57562f1fca3ae7b133f895ae13c3d08
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md5sum: f57562f1fca3ae7b133f895ae13c3d08
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should_exist: true
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- path: ./output/salmon/salmon/ref_indexing.log
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- path: ./output/salmon/salmon/ref_indexing.log
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should_exist: true
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- path: ./output/salmon/salmon/versionInfo.json
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- path: ./output/salmon/salmon/versionInfo.json
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md5sum: 204865f645102587c4953fccb256797c
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md5sum: 204865f645102587c4953fccb256797c
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should_exist: true
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- path: ./output/salmon/salmon/seq.bin
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- path: ./output/salmon/salmon/seq.bin
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should_exist: true
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- path: ./output/salmon/salmon/pre_indexing.log
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- path: ./output/salmon/salmon/pre_indexing.log
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should_exist: true
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- path: ./output/salmon/salmon/rank.bin
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- path: ./output/salmon/salmon/rank.bin
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md5sum: 3f34dca1ec26cdf89a6d19b1d1c07e71
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md5sum: 3f34dca1ec26cdf89a6d19b1d1c07e71
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should_exist: true
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- path: ./output/salmon/salmon/reflengths.bin
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- path: ./output/salmon/salmon/reflengths.bin
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md5sum: f57562f1fca3ae7b133f895ae13c3d08
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md5sum: f57562f1fca3ae7b133f895ae13c3d08
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should_exist: true
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- path: ./output/salmon/salmon/ctable.bin
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- path: ./output/salmon/salmon/ctable.bin
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should_exist: true
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- path: ./output/salmon/salmon/ctg_offsets.bin
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- path: ./output/salmon/salmon/ctg_offsets.bin
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md5sum: 27a76542337df436436e66017f66dd25
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md5sum: 27a76542337df436436e66017f66dd25
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should_exist: true
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- path: ./output/salmon/salmon/pos.bin
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- path: ./output/salmon/salmon/pos.bin
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should_exist: true
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- path: ./output/salmon/salmon/duplicate_clusters.tsv
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- path: ./output/salmon/salmon/duplicate_clusters.tsv
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md5sum: 51b5292e3a874119c0e1aa566e95d70c
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md5sum: 51b5292e3a874119c0e1aa566e95d70c
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should_exist: true
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- path: ./output/salmon/salmon/refAccumLengths.bin
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- path: ./output/salmon/salmon/refAccumLengths.bin
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md5sum: 8d1970505b2b08ca0eb5ff7722b48cde
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md5sum: 8d1970505b2b08ca0eb5ff7722b48cde
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should_exist: true
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- path: ./output/salmon/salmon/refseq.bin
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- path: ./output/salmon/salmon/refseq.bin
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md5sum: 79c4ddf34be3a98d5a7b9d153629a6f7
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md5sum: 79c4ddf34be3a98d5a7b9d153629a6f7
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should_exist: true
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- name: salmon quant paired end
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- name: salmon quant paired end
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command: nextflow run ./tests/software/salmon -profile docker -entry test_salmon_quant_pe -c tests/config/nextflow.config
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command: nextflow run ./tests/software/salmon -profile docker -entry test_salmon_quant_pe -c tests/config/nextflow.config
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@ -53,78 +38,51 @@
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- salmon_quant_pe
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- salmon_quant_pe
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files:
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files:
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- path: ./output/salmon/salmon/pos.bin
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- path: ./output/salmon/salmon/pos.bin
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should_exist: true
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- path: ./output/salmon/salmon/versionInfo.json
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- path: ./output/salmon/salmon/versionInfo.json
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md5sum: 204865f645102587c4953fccb256797c
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md5sum: 204865f645102587c4953fccb256797c
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should_exist: true
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- path: ./output/salmon/salmon/complete_ref_lens.bin
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- path: ./output/salmon/salmon/complete_ref_lens.bin
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md5sum: f57562f1fca3ae7b133f895ae13c3d08
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md5sum: f57562f1fca3ae7b133f895ae13c3d08
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should_exist: true
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- path: ./output/salmon/test/lib_format_counts.json
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- path: ./output/salmon/test/lib_format_counts.json
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md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
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md5sum: a8b6e6bfbc28c6e790ddaec559fad9ea
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should_exist: true
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- path: ./output/salmon/test/aux_info/expected_bias.gz
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- path: ./output/salmon/test/aux_info/expected_bias.gz
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md5sum: 24ee10af39b41ecf4f4e08faaaf537ee
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md5sum: 24ee10af39b41ecf4f4e08faaaf537ee
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should_exist: true
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- path: ./output/salmon/test/libParams/flenDist.txt
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- path: ./output/salmon/test/libParams/flenDist.txt
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md5sum: f90c7256c9b18d4131f4d4ecb69d0f55
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md5sum: f90c7256c9b18d4131f4d4ecb69d0f55
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should_exist: true
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- path: ./output/salmon/salmon/ref_indexing.log
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- path: ./output/salmon/salmon/ref_indexing.log
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should_exist: true
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- path: ./output/salmon/test/aux_info/observed_bias_3p.gz
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- path: ./output/salmon/test/aux_info/observed_bias_3p.gz
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md5sum: ef13c06a538e9c34ca9f84212c82f44e
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md5sum: ef13c06a538e9c34ca9f84212c82f44e
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should_exist: true
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- path: ./output/salmon/salmon/ctable.bin
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- path: ./output/salmon/salmon/ctable.bin
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should_exist: true
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- path: ./output/salmon/test/aux_info/meta_info.json
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- path: ./output/salmon/test/aux_info/meta_info.json
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should_exist: true
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- path: ./output/salmon/test/aux_info/fld.gz
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- path: ./output/salmon/test/aux_info/fld.gz
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should_exist: true
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- path: ./output/salmon/salmon/refseq.bin
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- path: ./output/salmon/salmon/refseq.bin
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md5sum: 79c4ddf34be3a98d5a7b9d153629a6f7
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md5sum: 79c4ddf34be3a98d5a7b9d153629a6f7
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should_exist: true
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- path: ./output/salmon/salmon/info.json
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- path: ./output/salmon/salmon/info.json
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md5sum: 61ff4d3471134c280668355ddd39e99f
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md5sum: 61ff4d3471134c280668355ddd39e99f
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should_exist: true
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- path: ./output/salmon/salmon/seq.bin
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- path: ./output/salmon/salmon/seq.bin
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should_exist: true
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- path: ./output/salmon/test/cmd_info.json
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- path: ./output/salmon/test/cmd_info.json
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md5sum: 007676e4d79de0809a03e0ea045ed4a1
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md5sum: 007676e4d79de0809a03e0ea045ed4a1
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should_exist: true
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- path: ./output/salmon/test/aux_info/observed_bias.gz
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- path: ./output/salmon/test/aux_info/observed_bias.gz
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md5sum: ef13c06a538e9c34ca9f84212c82f44e
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md5sum: ef13c06a538e9c34ca9f84212c82f44e
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should_exist: true
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- path: ./output/salmon/salmon/duplicate_clusters.tsv
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- path: ./output/salmon/salmon/duplicate_clusters.tsv
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md5sum: 51b5292e3a874119c0e1aa566e95d70c
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md5sum: 51b5292e3a874119c0e1aa566e95d70c
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should_exist: true
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- path: ./output/salmon/test/quant.genes.sf
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- path: ./output/salmon/test/quant.genes.sf
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md5sum: eb3e7b44801a0b3af07c25963927e20d
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md5sum: eb3e7b44801a0b3af07c25963927e20d
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should_exist: true
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- path: ./output/salmon/salmon/rank.bin
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- path: ./output/salmon/salmon/rank.bin
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md5sum: 3f34dca1ec26cdf89a6d19b1d1c07e71
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md5sum: 3f34dca1ec26cdf89a6d19b1d1c07e71
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should_exist: true
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- path: ./output/salmon/salmon/mphf.bin
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- path: ./output/salmon/salmon/mphf.bin
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md5sum: 53669a47610e33e031faafd32703b714
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md5sum: 53669a47610e33e031faafd32703b714
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should_exist: true
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- path: ./output/salmon/test/aux_info/ambig_info.tsv
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- path: ./output/salmon/test/aux_info/ambig_info.tsv
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md5sum: 950001575c24fb6bc2c7a6848043b126
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md5sum: 950001575c24fb6bc2c7a6848043b126
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should_exist: true
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- path: ./output/salmon/test/logs/salmon_quant.log
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- path: ./output/salmon/test/logs/salmon_quant.log
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should_exist: true
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- path: ./output/salmon/salmon/pre_indexing.log
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- path: ./output/salmon/salmon/pre_indexing.log
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should_exist: true
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- path: ./output/salmon/salmon/refAccumLengths.bin
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- path: ./output/salmon/salmon/refAccumLengths.bin
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md5sum: 8d1970505b2b08ca0eb5ff7722b48cde
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md5sum: 8d1970505b2b08ca0eb5ff7722b48cde
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should_exist: true
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- path: ./output/salmon/test/quant.sf
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- path: ./output/salmon/test/quant.sf
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md5sum: addb78e233f248b8f62cae3e217bf689
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md5sum: addb78e233f248b8f62cae3e217bf689
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should_exist: true
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- path: ./output/salmon/salmon/reflengths.bin
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- path: ./output/salmon/salmon/reflengths.bin
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md5sum: f57562f1fca3ae7b133f895ae13c3d08
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md5sum: f57562f1fca3ae7b133f895ae13c3d08
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should_exist: true
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- path: ./output/salmon/salmon/ctg_offsets.bin
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- path: ./output/salmon/salmon/ctg_offsets.bin
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md5sum: 27a76542337df436436e66017f66dd25
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md5sum: 27a76542337df436436e66017f66dd25
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should_exist: true
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- name: salmon quant single-end
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- name: salmon quant single-end
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command: nextflow run ./tests/software/salmon -profile docker -entry test_salmon_quant_se -c tests/config/nextflow.config
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command: nextflow run ./tests/software/salmon -profile docker -entry test_salmon_quant_se -c tests/config/nextflow.config
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@ -135,74 +93,47 @@
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files:
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files:
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- path: ./output/salmon/salmon/versionInfo.json
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- path: ./output/salmon/salmon/versionInfo.json
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md5sum: 204865f645102587c4953fccb256797c
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md5sum: 204865f645102587c4953fccb256797c
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should_exist: true
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- path: ./output/salmon/salmon/ctg_offsets.bin
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- path: ./output/salmon/salmon/ctg_offsets.bin
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md5sum: 27a76542337df436436e66017f66dd25
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md5sum: 27a76542337df436436e66017f66dd25
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should_exist: true
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- path: ./output/salmon/test/aux_info/meta_info.json
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- path: ./output/salmon/test/aux_info/meta_info.json
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should_exist: true
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- path: ./output/salmon/salmon/duplicate_clusters.tsv
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- path: ./output/salmon/salmon/duplicate_clusters.tsv
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md5sum: 51b5292e3a874119c0e1aa566e95d70c
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md5sum: 51b5292e3a874119c0e1aa566e95d70c
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should_exist: true
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- path: ./output/salmon/salmon/pre_indexing.log
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- path: ./output/salmon/salmon/pre_indexing.log
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should_exist: true
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- path: ./output/salmon/salmon/rank.bin
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- path: ./output/salmon/salmon/rank.bin
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md5sum: 3f34dca1ec26cdf89a6d19b1d1c07e71
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md5sum: 3f34dca1ec26cdf89a6d19b1d1c07e71
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should_exist: true
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- path: ./output/salmon/test/aux_info/observed_bias.gz
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- path: ./output/salmon/test/aux_info/observed_bias.gz
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md5sum: ef13c06a538e9c34ca9f84212c82f44e
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md5sum: ef13c06a538e9c34ca9f84212c82f44e
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should_exist: true
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- path: ./output/salmon/test/aux_info/expected_bias.gz
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- path: ./output/salmon/test/aux_info/expected_bias.gz
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md5sum: 24ee10af39b41ecf4f4e08faaaf537ee
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md5sum: 24ee10af39b41ecf4f4e08faaaf537ee
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should_exist: true
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- path: ./output/salmon/test/aux_info/fld.gz
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- path: ./output/salmon/test/aux_info/fld.gz
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should_exist: true
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- path: ./output/salmon/salmon/ctable.bin
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- path: ./output/salmon/salmon/ctable.bin
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should_exist: true
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- path: ./output/salmon/salmon/info.json
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- path: ./output/salmon/salmon/info.json
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md5sum: 61ff4d3471134c280668355ddd39e99f
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md5sum: 61ff4d3471134c280668355ddd39e99f
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should_exist: true
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- path: ./output/salmon/test/quant.genes.sf
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- path: ./output/salmon/test/quant.genes.sf
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md5sum: 5b39785b4d8da533c08ee4a6c8bc1211
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md5sum: 5b39785b4d8da533c08ee4a6c8bc1211
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should_exist: true
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- path: ./output/salmon/salmon/refseq.bin
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- path: ./output/salmon/salmon/refseq.bin
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md5sum: 79c4ddf34be3a98d5a7b9d153629a6f7
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md5sum: 79c4ddf34be3a98d5a7b9d153629a6f7
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should_exist: true
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- path: ./output/salmon/salmon/complete_ref_lens.bin
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- path: ./output/salmon/salmon/complete_ref_lens.bin
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md5sum: f57562f1fca3ae7b133f895ae13c3d08
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md5sum: f57562f1fca3ae7b133f895ae13c3d08
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should_exist: true
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- path: ./output/salmon/test/logs/salmon_quant.log
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- path: ./output/salmon/test/logs/salmon_quant.log
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should_exist: true
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- path: ./output/salmon/test/libParams/flenDist.txt
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- path: ./output/salmon/test/libParams/flenDist.txt
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md5sum: 2de170bdc9f6fd237d286429b292bb28
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md5sum: 2de170bdc9f6fd237d286429b292bb28
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should_exist: true
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- path: ./output/salmon/salmon/ref_indexing.log
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- path: ./output/salmon/salmon/ref_indexing.log
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should_exist: true
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- path: ./output/salmon/salmon/refAccumLengths.bin
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- path: ./output/salmon/salmon/refAccumLengths.bin
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md5sum: 8d1970505b2b08ca0eb5ff7722b48cde
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md5sum: 8d1970505b2b08ca0eb5ff7722b48cde
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should_exist: true
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- path: ./output/salmon/salmon/seq.bin
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- path: ./output/salmon/salmon/seq.bin
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should_exist: true
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- path: ./output/salmon/salmon/mphf.bin
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- path: ./output/salmon/salmon/mphf.bin
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md5sum: 53669a47610e33e031faafd32703b714
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md5sum: 53669a47610e33e031faafd32703b714
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should_exist: true
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- path: ./output/salmon/test/aux_info/observed_bias_3p.gz
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- path: ./output/salmon/test/aux_info/observed_bias_3p.gz
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md5sum: ef13c06a538e9c34ca9f84212c82f44e
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md5sum: ef13c06a538e9c34ca9f84212c82f44e
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should_exist: true
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- path: ./output/salmon/test/lib_format_counts.json
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- path: ./output/salmon/test/lib_format_counts.json
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md5sum: aca0a40187eb407b1b8fc85c01284583
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md5sum: aca0a40187eb407b1b8fc85c01284583
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should_exist: true
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- path: ./output/salmon/salmon/reflengths.bin
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- path: ./output/salmon/salmon/reflengths.bin
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||||||
md5sum: f57562f1fca3ae7b133f895ae13c3d08
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md5sum: f57562f1fca3ae7b133f895ae13c3d08
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should_exist: true
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- path: ./output/salmon/salmon/pos.bin
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- path: ./output/salmon/salmon/pos.bin
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should_exist: true
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- path: ./output/salmon/test/cmd_info.json
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- path: ./output/salmon/test/cmd_info.json
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md5sum: d95f9bd2287a55fa44bbd9b9d4c4ff8a
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md5sum: d95f9bd2287a55fa44bbd9b9d4c4ff8a
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should_exist: true
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- path: ./output/salmon/test/aux_info/ambig_info.tsv
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- path: ./output/salmon/test/aux_info/ambig_info.tsv
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md5sum: c3306d26186ffe018ad4f19d52256180
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md5sum: c3306d26186ffe018ad4f19d52256180
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should_exist: true
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- path: ./output/salmon/test/quant.sf
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- path: ./output/salmon/test/quant.sf
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md5sum: b08095ac70f89efc3146cdf488d0eb73
|
md5sum: b08095ac70f89efc3146cdf488d0eb73
|
||||||
should_exist: true
|
|
||||||
|
|
|
||||||
Loading…
Reference in a new issue