added quast workflow

This commit is contained in:
kevinmenden 2021-01-29 16:15:45 +01:00
parent e8bd730164
commit 34cfc32c29

40
.github/workflows/quast.yml vendored Normal file
View file

@ -0,0 +1,40 @@
name: quast
on:
push:
paths:
- software/quast/**
- .github/workflows/quast.yml
- tests
pull_request:
paths:
- software/pquast/**
- .github/workflows/quest.yml
- tests
jobs:
ci_test:
runs-on: ubuntu-latest
strategy:
matrix:
nxf_version: [20.11.0-edge]
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
env:
NXF_VER: ${{ matrix.nxf_version }}
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: "3.x"
- name: Install dependencies
run: python -m pip install --upgrade pip pytest-workflow
# Test the module
- run: pytest --tag quest --symlink --wt 2