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Updated tools/bwa/mem/meta.yml

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This commit is contained in:
Jeremy1805 2020-03-05 16:31:46 +00:00
parent a4836ae3c3
commit 356e23823c
2 changed files with 4 additions and 6 deletions
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1
.gitignore vendored
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@ -2,5 +2,4 @@
work/ work/
data/ data/
results/ results/
tools/bwa/mem_ignore
.DS_Store .DS_Store

9
tools/bwa/mem/meta.yml
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@ -15,19 +15,18 @@ input:
- -
- id: - id:
type: val type: val
description: read id for paired-end sequences description: read/read pair id
- reads: - reads:
type: file type: file
description: Input fastq file description: Input fastq file
pattern: *.{fastq,fq} pattern: *.{fastq,fq}
- genome:
type: file
description: Input fasta reference genome
pattern: *.{fasta,fa}
- index: - index:
type: file type: file
description: bwa indexes file description: bwa indexes file
pattern: *.{fasta,fa}.{amb,ann,bwt,pac,sa} pattern: *.{fasta,fa}.{amb,ann,bwt,pac,sa}
- prefix:
type: val
description: bwa index prefix, equivalent to index file names without extensions. Usually the reference genome file name unless otherwise specified.
output: output:
- -
- bam: - bam: