millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-10 20:23:10 +00:00
Code Issues Releases Packages Activity

Updated tools/bwa/mem/meta.yml

Browse source
This commit is contained in:
Jeremy1805 2020-03-05 16:31:46 +00:00
parent a4836ae3c3
commit 356e23823c
2 changed files with 4 additions and 6 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

1
.gitignore vendored
View file

@ -2,5 +2,4 @@
work/
data/
results/
tools/bwa/mem_ignore
.DS_Store

9
tools/bwa/mem/meta.yml
View file

@ -15,19 +15,18 @@ input:
-
- id:
type: val
description: read id for paired-end sequences
description: read/read pair id
- reads:
type: file
description: Input fastq file
pattern: *.{fastq,fq}
- genome:
type: file
description: Input fasta reference genome
pattern: *.{fasta,fa}
- index:
type: file
description: bwa indexes file
pattern: *.{fasta,fa}.{amb,ann,bwt,pac,sa}
- prefix:
type: val
description: bwa index prefix, equivalent to index file names without extensions. Usually the reference genome file name unless otherwise specified.
output:
-
- bam: