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Fix CI test failure

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This commit is contained in:
Michael L Heuer 2021-02-05 11:41:36 -06:00
parent 6b873d7d33
commit 35ed09b06e
1 changed files with 1 additions and 1 deletions
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2
software/minimap2/align/main.nf
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@ -29,7 +29,7 @@ process MINIMAP2_ALIGN {
script: script:
def software = getSoftwareName(task.process) def software = getSoftwareName(task.process)
def prefix = options.suffix ? "${meta.id}${options.suffix}" : "${meta.id}" def prefix = options.suffix ? "${meta.id}${options.suffix}" : "${meta.id}"
def input_reads = meta.single_end ? "-r $reads" : "-1 ${reads[0]} -2 ${reads[1]}" def input_reads = meta.single_end ? "$reads" : "${reads[0]} ${reads[1]}"
""" """
minimap2 \\ minimap2 \\
$options.args \\ $options.args \\