diff --git a/tests/modules/gatk4/markduplicatesspark/test.yml b/tests/modules/gatk4/markduplicatesspark/test.yml index ea7f7d4b..5ee751c4 100644 --- a/tests/modules/gatk4/markduplicatesspark/test.yml +++ b/tests/modules/gatk4/markduplicatesspark/test.yml @@ -25,4 +25,4 @@ - path: output/gatk4/test.bam md5sum: 898cb0a6616897d8ada90bab53bf0837 - path: output/gatk4/test.metrics - contains: "## METRICS CLASS\torg.broadinstitute.hellbender.utils.read.markduplicates.GATKDuplicationMetrics\nLIBRARY\tUNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED\tSECONDARY_OR_SUPPLEMENTARY_RDS\tUNMAPPED_READS\tUNPAIRED_READ_DUPLICATES\tREAD_PAIR_DUPLICATES\tREAD_PAIR_OPTICAL_DUPLICATESPERCENT_DUPLICATION\tESTIMATED_LIBRARY_SIZE\ntestN\t0\t2820\t2\t2\t0\t828\t0\t0.293617\t3807\ntestT\t0\t2718\t0\t0\t0\t716\t0\t0.263429\t4206" + contains: "## METRICS CLASS org.broadinstitute.hellbender.utils.read.markduplicates.GATKDuplicationMetrics"