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feat: add original input as optional output channel (#1147)

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Maxime U. Garcia 2021-12-09 11:04:53 +01:00 committed by GitHub
parent a9dd46f010
commit 37c5cb495d
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1 changed files with 7 additions and 4 deletions
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11
modules/samtools/index/main.nf
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@ -11,10 +11,13 @@ process SAMTOOLS_INDEX {
tuple val(meta), path(input) tuple val(meta), path(input)
output: output:
tuple val(meta), path("*.bai") , optional:true, emit: bai tuple val(meta), path("*.bam" , includeInputs:true), path("*.bai") , optional:true, emit: bam_bai
tuple val(meta), path("*.crai"), optional:true, emit: crai tuple val(meta), path("*.bai") , optional:true, emit: bai
tuple val(meta), path("*.csi") , optional:true, emit: csi tuple val(meta), path("*.bam" , includeInputs:true), path("*.csi") , optional:true, emit: bam_csi
path "versions.yml" , emit: versions tuple val(meta), path("*.csi") , optional:true, emit: csi
tuple val(meta), path("*.cram", includeInputs:true), path("*.crai"), optional:true, emit: cram_crai
tuple val(meta), path("*.crai") , optional:true, emit: crai
path "versions.yml" , emit: versions
script: script:
def args = task.ext.args ?: '' def args = task.ext.args ?: ''