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Add gff as input

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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
This commit is contained in:
Anders Goncalves da Silva 2021-02-15 19:54:36 -08:00 • committed by GitHub
parent 8b6989f2d7
commit 39401ccd07
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1 changed files with 4 additions and 3 deletions
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tests/software/ivar/variants/main.nf
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@ -8,10 +8,11 @@ include { IVAR_VARIANTS } from '../../../../software/ivar/variants/main.nf' addP
workflow test_ivar_variants_no_gff {
def ref = file("${launchDir}/tests/data/fasta/sarscov2/MN908947.3.fa", checkIfExists: true)
def dummy = file("${launchDir}/tests/data/dummy/dummy_file.txt", checkIfExists: true)
def input = []
input = [ [ id:'test'],
file("${launchDir}/tests/data/bam/test-sc2-artic-v3-sorted-trimmed.bam", checkIfExists: true) ]
IVAR_VARIANTS ( input, ref )
IVAR_VARIANTS ( input, ref, dummy )
}
params.gff = file("${launchDir}/tests/data/gff/sarscov2/MN908947.3.gff3", checkIfExists: true)