From 39b8600dbbec6e193314c410c81931427908a9a8 Mon Sep 17 00:00:00 2001 From: drpatelh Date: Wed, 3 Feb 2021 17:02:52 +0000 Subject: [PATCH] Fix trimgalore test --- tests/software/trimgalore/test.yml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/tests/software/trimgalore/test.yml b/tests/software/trimgalore/test.yml index a37ffdb6..a3fba07b 100644 --- a/tests/software/trimgalore/test.yml +++ b/tests/software/trimgalore/test.yml @@ -5,8 +5,8 @@ files: # These can't be md5'd reliably # TODO Test for includes - - path: output/test_single_end/test.fastq.gz_trimming_report.txt - - path: output/test_single_end/test_trimmed.fq.gz + - path: output/trimgalore/test.fastq.gz_trimming_report.txt + - path: output/trimgalore/test_trimmed.fq.gz - name: trimgalore paired-end command: nextflow run ./tests/software/trimgalore/ -entry test_trimgalore_paired_end -c tests/config/nextflow.config @@ -15,7 +15,7 @@ files: # These can't be md5'd reliably # TODO Test for includes - - path: output/test_paired_end/test_1.fastq.gz_trimming_report.txt - - path: output/test_paired_end/test_1_val_1.fq.gz - - path: output/test_paired_end/test_2.fastq.gz_trimming_report.txt - - path: output/test_paired_end/test_2_val_2.fq.gz + - path: output/trimgalore/test_1.fastq.gz_trimming_report.txt + - path: output/trimgalore/test_1_val_1.fq.gz + - path: output/trimgalore/test_2.fastq.gz_trimming_report.txt + - path: output/trimgalore/test_2_val_2.fq.gz