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working test

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This commit is contained in:
kevinmenden 2021-02-19 13:36:42 +01:00
parent c288e081b4
commit 3ac5c5fad6
3 changed files with 8 additions and 3 deletions
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4
.github/filters.yml vendored
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@ -128,6 +128,10 @@ gatk_createsequencedictionary:
- software/gatk/createsequencedictionary/**
- tests/software/gatk/createsequencedictionary/**
gatk4_mergevcfs:
- software/gatk4/mergevcfs/**
- tests/software/gatk4/mergevcfs/**
gffread:
- software/gffread/**
- tests/software/gffread/**

3
tests/software/gatk4/mergevcfs/main.nf
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@ -9,7 +9,8 @@ workflow test_gatk4_mergevcfs {
def input = []
input = [ [ id:'test' ], // meta map
[ file("${launchDir}/tests/data/vcf/test.vcf", checkIfExists: true),
file("${launchDir}/tests/data/vcf/test2.vcf.gz", checkIfExists: true) ] ]
file("${launchDir}/tests/data/vcf/test2.vcf.gz", checkIfExists: true),
file("${launchDir}/tests/data/vcf/test3.vcf.gz", checkIfExists: true) ] ]
GATK4_MERGEVCFS ( input )
}

4
tests/software/gatk4/mergevcfs/test.yml
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@ -4,5 +4,5 @@
- gatk4
- gatk4_mergevcfs
files:
- path: output/gatk4/test.fastq.gz
md5sum: 61c6d3556ac6e0d09d800415b9a48508
- path: output/gatk4/test.merged.vcf.gz
md5sum: f25850b7bd4d362b5ea67d4453e9df55