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Merge pull request #1727 from maxulysse/master_ensemblvep

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update VEP version + cache
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Maxime U. Garcia 2022-06-02 16:15:31 +02:00 committed by GitHub
commit 3adb54c606
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3 changed files with 10 additions and 10 deletions
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4
modules/ensemblvep/Dockerfile
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@ -11,8 +11,8 @@ RUN conda env create -f /environment.yml && conda clean -a
# Setup default ARG variables
ARG GENOME=GRCh38
ARG SPECIES=homo_sapiens
ARG VEP_VERSION=104
ARG VEP_TAG=104.3
ARG VEP_VERSION=105
ARG VEP_TAG=105.0
# Add conda installation dir to PATH (instead of doing 'conda activate')
ENV PATH /opt/conda/envs/nf-core-vep-${VEP_TAG}/bin:$PATH

12
modules/ensemblvep/build.sh
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@ -20,9 +20,9 @@ build_push() {
docker push nfcore/vep:${VEP_TAG}.${GENOME}
}
build_push "GRCh37" "homo_sapiens" "104" "104.3"
build_push "GRCh38" "homo_sapiens" "104" "104.3"
build_push "GRCm38" "mus_musculus" "102" "104.3"
build_push "GRCm39" "mus_musculus" "104" "104.3"
build_push "CanFam3.1" "canis_lupus_familiaris" "104" "104.3"
build_push "WBcel235" "caenorhabditis_elegans" "104" "104.3"
build_push "GRCh37" "homo_sapiens" "105" "105.0"
build_push "GRCh38" "homo_sapiens" "105" "105.0"
build_push "GRCm38" "mus_musculus" "102" "105.0"
build_push "GRCm39" "mus_musculus" "105" "105.0"
build_push "CanFam3.1" "canis_lupus_familiaris" "104" "105.0"
build_push "WBcel235" "caenorhabditis_elegans" "105" "105.0"

4
modules/ensemblvep/environment.yml
View file

@ -1,10 +1,10 @@
# You can use this file to create a conda environment for this module:
# conda env create -f environment.yml
name: nf-core-vep-104.3
name: nf-core-vep-105.0
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bioconda::ensembl-vep=104.3
- bioconda::ensembl-vep=105.0