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MethylDackel: fix version scraping (#401)

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* methyldackel: fix version scraping

* fix output file path
This commit is contained in:
Patrick Hüther 2021-04-06 11:59:33 +02:00 committed by GitHub
parent 6c70d65ae6
commit 3b1dcc9cc0
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3 changed files with 6 additions and 6 deletions
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2
software/methyldackel/extract/main.nf
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@ -35,6 +35,6 @@ process METHYLDACKEL_EXTRACT {
$fasta \\ $fasta \\
$bam $bam
echo \$(methyldackel --version 2>&1) | cut -f1 -d" " > ${software}.version.txt echo \$(MethylDackel --version 2>&1) | cut -f1 -d" " > ${software}.version.txt
""" """
} }

8
software/methyldackel/mbias/main.nf
View file

@ -24,8 +24,8 @@ process METHYLDACKEL_MBIAS {
path fai path fai
output: output:
tuple val(meta), path("*.txt"), emit: txt tuple val(meta), path("*.mbias.txt"), emit: txt
path "*.version.txt" , emit: version path "*.version.txt" , emit: version
script: script:
def software = getSoftwareName(task.process) def software = getSoftwareName(task.process)
@ -37,8 +37,8 @@ process METHYLDACKEL_MBIAS {
$bam \\ $bam \\
$prefix \\ $prefix \\
--txt \\ --txt \\
> ${prefix}.txt > ${prefix}.mbias.txt
echo \$(methyldackel --version 2>&1) | cut -f1 -d" " > ${software}.version.txt echo \$(MethylDackel --version 2>&1) | cut -f1 -d" " > ${software}.version.txt
""" """
} }

2
tests/software/methyldackel/mbias/test.yml
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@ -4,5 +4,5 @@
- methyldackel - methyldackel
- methyldackel_mbias - methyldackel_mbias
files: files:
- path: output/methyldackel/test.txt - path: output/methyldackel/test.mbias.txt
md5sum: 357bb944dc2cdffcc47fa0d34376e016 md5sum: 357bb944dc2cdffcc47fa0d34376e016