chores: remove deprecated module

deprecated/htslib/tabix/main.nf

@@ -1,16 +0,0 @@
-process htslib_tabix {
-    tag "$vcf"
-
-    container 'quay.io/biocontainers/tabix:0.2.6--ha92aebf_0'
-
-    input:
-        path vcf
-
-    output:
-        path "${vcf}.tbi"
-
-    script:
-    """
-    tabix -p vcf ${vcf}
-    """
-}

deprecated/htslib/tabix/meta.yml

@@ -1,26 +0,0 @@
-name: htslib tabix
-description: create tabix index from a bgzip vcf file
-keywords:
-    - index
-    - tabix
-tools:
-    - bwa:
-        description: |
-            Generic indexer for TAB-delimited genome position files.
-        homepage: https://www.htslib.org/
-        documentation: https://www.htslib.org/doc/tabix.1.html
-        doi: 10.1093/bioinformatics/btq671
-input:
-    -
-        - input:
-            type: file
-            description: Input vcf.gz file
-            pattern: "*.{vcf.gz}"
-output:
-    -
-        - index:
-            type: file
-            description: tabix index file
-            pattern: "*.{vcf.gz.tbi}"
-authors:
-    - "@maxulysse"

deprecated/htslib/tabix/test/main.nf

@@ -1,13 +0,0 @@
-#!/usr/bin/env nextflow
-nextflow.preview.dsl = 2
-include '../../../tests/functions/check_process_outputs.nf' params(params)
-include '../main.nf' params(params)
-
-// Define input channels
-input = '../../../test-datasets/tools/file.vcf.gz'
-
-// Run the workflow
-workflow {
-    tabix_index(ch_read_files)
-    // .check_output()
-}

deprecated/htslib/tabix/test/nextflow.config

@@ -1,2 +0,0 @@
-docker.enabled = true
-params.outdir = './results'