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Don't hardcode forced output names

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This commit is contained in:
James Fellows Yates 2022-05-31 15:46:28 +02:00
parent 0b895871d7
commit 3e20ca7e9a
2 changed files with 4 additions and 3 deletions
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1
tests/modules/filtlong/nextflow.config
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@ -3,5 +3,6 @@ process {
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" } publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
ext.args = "--min_length 10" ext.args = "--min_length 10"
ext.prefix = "${meta.id}_lr"
} }

6
tests/modules/filtlong/test.yml
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@ -3,7 +3,7 @@
tags: tags:
- filtlong - filtlong
files: files:
- path: output/filtlong/test_lr_filtlong.fastq.gz - path: output/filtlong/test_lr.fastq.gz
contains: contains:
- "@00068f7a-51b3-4933-8fc6-7d6e29181ff9" - "@00068f7a-51b3-4933-8fc6-7d6e29181ff9"
@ -12,7 +12,7 @@
tags: tags:
- filtlong - filtlong
files: files:
- path: output/filtlong/test_lr_filtlong.fastq.gz - path: output/filtlong/test_lr.fastq.gz
contains: contains:
- "@00068f7a-51b3-4933-8fc6-7d6e29181ff9" - "@00068f7a-51b3-4933-8fc6-7d6e29181ff9"
@ -21,6 +21,6 @@
tags: tags:
- filtlong - filtlong
files: files:
- path: output/filtlong/test_lr_filtlong.fastq.gz - path: output/filtlong/test_lr.fastq.gz
contains: contains:
- "@00068f7a-51b3-4933-8fc6-7d6e29181ff9" - "@00068f7a-51b3-4933-8fc6-7d6e29181ff9"