diff --git a/.github/workflows/cutadapt.yml b/.github/workflows/deprecated/cutadapt.yml
similarity index 100%
rename from .github/workflows/cutadapt.yml
rename to .github/workflows/deprecated/cutadapt.yml
diff --git a/.github/workflows/fastqc.yml b/.github/workflows/deprecated/fastqc.yml
similarity index 100%
rename from .github/workflows/fastqc.yml
rename to .github/workflows/deprecated/fastqc.yml
diff --git a/.github/workflows/samtools_index.yml b/.github/workflows/deprecated/samtools_index.yml
similarity index 100%
rename from .github/workflows/samtools_index.yml
rename to .github/workflows/deprecated/samtools_index.yml
diff --git a/.github/workflows/samtools_sort.yml b/.github/workflows/deprecated/samtools_sort.yml
similarity index 100%
rename from .github/workflows/samtools_sort.yml
rename to .github/workflows/deprecated/samtools_sort.yml
diff --git a/.github/workflows/tcoffee.yml b/.github/workflows/deprecated/tcoffee.yml
similarity index 100%
rename from .github/workflows/tcoffee.yml
rename to .github/workflows/deprecated/tcoffee.yml
diff --git a/.github/workflows/trim_galore.yml b/.github/workflows/deprecated/trim_galore.yml
similarity index 100%
rename from .github/workflows/trim_galore.yml
rename to .github/workflows/deprecated/trim_galore.yml
diff --git a/software/fastqc/main.nf b/software/fastqc/main.nf
index 7f882525..ed80e019 100644
--- a/software/fastqc/main.nf
+++ b/software/fastqc/main.nf
@@ -1,5 +1,5 @@
 // Import generic module functions
-include { initOptions; saveFiles; getSoftwareName } from './functions'
+include { initOptions; saveFiles; getSoftwareName } from './lib/functions'
 
 process FASTQC {
     tag "$meta.id"