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revert markduplciatespark container

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Rike 2022-05-12 17:40:42 +02:00
parent 8792d102ee
commit 3fda3903dc
1 changed files with 3 additions and 3 deletions
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modules/gatk4/markduplicatesspark/main.nf
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@ -2,10 +2,10 @@ process GATK4_MARKDUPLICATES_SPARK {
tag "$meta.id" tag "$meta.id"
label 'process_high' label 'process_high'
conda (params.enable_conda ? "bioconda::gatk4=4.2.6.1" : null) conda (params.enable_conda ? "bioconda::gatk4=4.2.3.0" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/gatk4:4.2.6.1--hdfd78af_0': 'https://depot.galaxyproject.org/singularity/gatk4:4.2.3.0--hdfd78af_0' :
'quay.io/biocontainers/gatk4:4.2.6.1--hdfd78af_0' }" 'broadinstitute/gatk:4.2.3.0' }"
input: input:
tuple val(meta), path(bam) tuple val(meta), path(bam)