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Remove -bam flag

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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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Edmund Miller 2021-01-15 09:39:32 -06:00 committed by GitHub
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commit 4181a7356c
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software/preseq/lcextrap/main.nf
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@ -37,7 +37,7 @@ process PRESEQ_LCEXTRAP {
$options.args \\
$paired_end \\
-output ${prefix}.ccurve.txt \\
-bam $bam
$bam
cp .command.err ${prefix}.command.log
echo \$(preseq 2>&1) | sed 's/^.*Version: //; s/Usage:.*\$//' > ${software}.version.txt