Fix bcftools/stats module (#1953)
* test verified commit bcftools * adjust tests * add suggestions * test for actual file contentmaster
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ab4c2e440d
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- name: bcftools stats test_bcftools_stats
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command: nextflow run ./tests/modules/bcftools/stats -entry test_bcftools_stats -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/stats/nextflow.config
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command: nextflow run ./tests/modules/bcftools/stats -entry test_bcftools_stats -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/stats/nextflow.config
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tags:
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- bcftools/stats
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- bcftools
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files:
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- path: output/bcftools/test.bcftools_stats.txt
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contains: ["TSTV 0 6 2 3.00 6 2 3.00", "DP 0 1 0 0.000000 5 55.555556"]
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- name: bcftools stats test_bcftools_stats_regions
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command: nextflow run ./tests/modules/bcftools/stats -entry test_bcftools_stats_regions -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/stats/nextflow.config
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tags:
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- bcftools/stats
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- bcftools
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files:
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- path: output/bcftools/test.bcftools_stats.txt
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contains: ["TSTV 0 5 1 5.00 5 1 5.00", "DP 0 1 0 0.000000 3 42.857143"]
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- name: bcftools stats test_bcftools_stats_targets
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command: nextflow run ./tests/modules/bcftools/stats -entry test_bcftools_stats_targets -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/stats/nextflow.config
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tags:
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- bcftools/stats
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- bcftools
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files:
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- path: output/bcftools/test.bcftools_stats.txt
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md5sum: b7b9abecf0f6a77c1472a380feca708b
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contains: ["TSTV 0 6 2 3.00 6 2 3.00", "DP 0 1 0 0.000000 5 55.555556"]
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