From 42310cbce29929b0c40520f852ca19307febf094 Mon Sep 17 00:00:00 2001 From: Carpanzano Date: Mon, 2 May 2022 16:14:38 +0200 Subject: [PATCH] updated config to reflect names in test workflow --- tests/modules/krona/ktimporttaxonomy/nextflow.config | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/tests/modules/krona/ktimporttaxonomy/nextflow.config b/tests/modules/krona/ktimporttaxonomy/nextflow.config index fb4d86f5..973b60ba 100644 --- a/tests/modules/krona/ktimporttaxonomy/nextflow.config +++ b/tests/modules/krona/ktimporttaxonomy/nextflow.config @@ -2,11 +2,11 @@ process { publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" } - withName: KRONA_KTIMPORTTAXONOMY_READS { + withName: TAXONOMY_READS { ext.args = '-t 3' } - withName: KRONA_KTIMPORTTAXONOMY_REPORT { + withName: TAXONOMY_REPORT { ext.args = '-m 3 -t 5' }