From 4279c84463d4354c01967f9a772f0b30440db3f8 Mon Sep 17 00:00:00 2001
From: "Robert A. Petit III" <robbie.petit@gmail.com>
Date: Tue, 15 Feb 2022 21:36:39 -0700
Subject: [PATCH] [bug]  pin bioperl version in Prokka module

---
 modules/prokka/main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/modules/prokka/main.nf b/modules/prokka/main.nf
index 3e46d1a1..804a55ec 100644
--- a/modules/prokka/main.nf
+++ b/modules/prokka/main.nf
@@ -2,7 +2,7 @@ process PROKKA {
     tag "$meta.id"
     label 'process_low'
 
-    conda (params.enable_conda ? "bioconda::prokka=1.14.6" : null)
+    conda (params.enable_conda ? "bioconda::prokka=1.14.6  bioconda::perl-bioperl=1.7.2" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/prokka:1.14.6--pl526_0' :
         'quay.io/biocontainers/prokka:1.14.6--pl526_0' }"