diff --git a/tests/subworkflows/nf-core/bam_qc_picard/main.nf b/tests/subworkflows/nf-core/bam_qc_picard/main.nf index d88f2bf9..9112416b 100644 --- a/tests/subworkflows/nf-core/bam_qc_picard/main.nf +++ b/tests/subworkflows/nf-core/bam_qc_picard/main.nf @@ -16,6 +16,8 @@ workflow test_bam_qc_picard_targetted { input = [ [ id:'test', single_end:false ], // meta map file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true) ] + bait = file(params.test_data['sarscov2']['genome']['baits_interval_list'], checkIfExists: true) + target = file(params.test_data['sarscov2']['genome']['targets_interval_list'], checkIfExists: true) - BAM_QC_PICARD ( input, [], file(params.test_data['sarscov2']['genome']['baits_interval_list'], checkIfExists: true), file(params.test_data['sarscov2']['genome']['targets_interval_list'], checkIfExists: true) ) + BAM_QC_PICARD ( input, [], bait, target ) }