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update prefix

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Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
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SusiJo 2022-06-02 16:23:09 +02:00 committed by GitHub
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commit 44daa5d687
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modules/gatk4/markduplicatesspark/main.nf
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@ -23,7 +23,7 @@ process GATK4_MARKDUPLICATES_SPARK {
script: script:
def args = task.ext.args ?: '' def args = task.ext.args ?: ''
def prefix = task.ext.prefix ?: "${meta.id}" + ".bam" def prefix = task.ext.prefix ?: "${meta.id}.bam"
def input_list = bam.collect{"--input $it"}.join(' ') def input_list = bam.collect{"--input $it"}.join(' ')