update prefix

Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
This commit is contained in:
SusiJo 2022-06-02 16:23:09 +02:00 committed by GitHub
parent 84f584875e
commit 44daa5d687
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23

View file

@ -23,7 +23,7 @@ process GATK4_MARKDUPLICATES_SPARK {
script:
def args = task.ext.args ?: ''
def prefix = task.ext.prefix ?: "${meta.id}" + ".bam"
def prefix = task.ext.prefix ?: "${meta.id}.bam"
def input_list = bam.collect{"--input $it"}.join(' ')