diff --git a/software/fastqc/test/data/test_R1.fastq.gz b/software/fastqc/test/input/test_R1.fastq.gz similarity index 100% rename from software/fastqc/test/data/test_R1.fastq.gz rename to software/fastqc/test/input/test_R1.fastq.gz diff --git a/software/fastqc/test/data/test_R2.fastq.gz b/software/fastqc/test/input/test_R2.fastq.gz similarity index 100% rename from software/fastqc/test/data/test_R2.fastq.gz rename to software/fastqc/test/input/test_R2.fastq.gz diff --git a/software/fastqc/test/data/test_single_end.fastq.gz b/software/fastqc/test/input/test_single_end.fastq.gz similarity index 100% rename from software/fastqc/test/data/test_single_end.fastq.gz rename to software/fastqc/test/input/test_single_end.fastq.gz diff --git a/software/fastqc/test/main.nf b/software/fastqc/test/main.nf index 0b0038d7..707ef01b 100755 --- a/software/fastqc/test/main.nf +++ b/software/fastqc/test/main.nf @@ -11,7 +11,7 @@ include { FASTQC } from '../main.nf' * Test if FASTQC runs with single-end data */ workflow test_single_end { - input_files = Channel.fromPath("data/test_single_end.fastq.gz") + input_files = Channel.fromPath("input/test_single_end.fastq.gz") .map {f -> [f.baseName, true, f]} FASTQC(input_files) } @@ -20,7 +20,7 @@ workflow test_single_end { * Test if FASTQC runs with paired end data */ workflow test_paired_end { - input_files = Channel.fromFilePairs("data/test_R{1,2}.fastq.gz") + input_files = Channel.fromFilePairs("input/test_R{1,2}.fastq.gz") .map {f -> [f[0], false, f[1]]} FASTQC(input_files) }