millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-09-20 23:32:05 +00:00
Code Issues Releases Packages Activity

fix metrics output

Browse source
This commit is contained in:
Matthias De Smet 2022-04-28 13:59:46 +02:00
parent 2fc857955f
commit 4618c542e9
1 changed files with 2 additions and 2 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

4
subworkflows/nf-core/bam_qc_picard/main.nf
View file

@ -29,12 +29,12 @@ workflow BAM_QC_PICARD {
log.error("Target interval channel is empty")
}
PICARD_COLLECTHSMETRICS( ch_bam, ch_fasta, ch_fasta_fai, ch_bait_interval, ch_target_interval )
ch_coverage_metrics.mix(PICARD_COLLECTHSMETRICS.out.coverage_metrics.first())
ch_coverage_metrics.mix(PICARD_COLLECTHSMETRICS.out.metrics.first())
ch_versions = ch_versions.mix(PICARD_COLLECTHSMETRICS.out.versions.first())
} else {
PICARD_COLLECTWGSMETRICS( ch_bam, ch_fasta )
ch_versions = ch_versions.mix(PICARD_COLLECTWGSMETRICS.out.versions.first())
ch_coverage_metrics.mix(PICARD_COLLECTWGSMETRICS.out.coverage_metrics.first())
ch_coverage_metrics.mix(PICARD_COLLECTWGSMETRICS.out.metrics.first())
}
emit: