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add stub for kallisto/index (#1944)

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Annick Renevey 2022-08-09 09:23:55 +02:00 committed by GitHub
parent b034029b59
commit 479e0638d1
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2 changed files with 18 additions and 0 deletions
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10
modules/kallisto/index/main.nf
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@ -31,4 +31,14 @@ process KALLISTO_INDEX {
kallisto: \$(echo \$(kallisto 2>&1) | sed 's/^kallisto //; s/Usage.*\$//') kallisto: \$(echo \$(kallisto 2>&1) | sed 's/^kallisto //; s/Usage.*\$//')
END_VERSIONS END_VERSIONS
""" """
stub:
"""
touch kallisto
cat <<-END_VERSIONS > versions.yml
"${task.process}":
kallisto: \$(echo \$(kallisto 2>&1) | sed 's/^kallisto //; s/Usage.*\$//')
END_VERSIONS
"""
} }

8
tests/modules/kallisto/index/test.yml
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@ -6,3 +6,11 @@
files: files:
- path: output/kallisto/kallisto - path: output/kallisto/kallisto
md5sum: bf8a58d329dddc96f0c32f7823bc0310 md5sum: bf8a58d329dddc96f0c32f7823bc0310
- name: kallisto index test_kallisto_index stub
command: nextflow run ./tests/modules/kallisto/index -entry test_kallisto_index -c ./tests/config/nextflow.config -c ./tests/modules/kallisto/index/nextflow.config -stub-run
tags:
- kallisto
- kallisto/index
files:
- path: output/kallisto/kallisto