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Update RGI: add database version reporting to module (#1824)
* Add rgi database version to module as fixed within the container/environment * Remove check of the version file * Or rather check for existance of the versions file not contents * Delete main.nf Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
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2 changed files with 1 additions and 2 deletions
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@ -32,6 +32,7 @@ process RGI_MAIN {
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cat <<-END_VERSIONS > versions.yml
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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"${task.process}":
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rgi: \$(rgi main --version)
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rgi: \$(rgi main --version)
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rgi-database: \$(rgi database --version)
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END_VERSIONS
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END_VERSIONS
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"""
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"""
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}
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}
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@ -8,5 +8,3 @@
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contains: ["NZ_LS483480", "orf_end", "perc_identity", "Pulvomycin"]
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contains: ["NZ_LS483480", "orf_end", "perc_identity", "Pulvomycin"]
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- path: output/rgi/test.txt
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- path: output/rgi/test.txt
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contains: ["NZ_LS483480", "ORF_ID", "Model_type", "Pulvomycin"]
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contains: ["NZ_LS483480", "ORF_ID", "Model_type", "Pulvomycin"]
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- path: output/rgi/versions.yml
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md5sum: 614a45d9d59680d4e743498773cf830a
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