diff --git a/modules/delly/call/main.nf b/modules/delly/call/main.nf
index d639ee16..b23ee01e 100644
--- a/modules/delly/call/main.nf
+++ b/modules/delly/call/main.nf
@@ -2,10 +2,10 @@ process DELLY_CALL {
     tag "$meta.id"
     label 'process_medium'
 
-    conda (params.enable_conda ? "bioconda::delly=0.8.7" : null)
+    conda (params.enable_conda ? "bioconda::delly=1.1.3" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/delly:0.8.7--he03298f_1' :
-        'quay.io/biocontainers/delly:0.8.7--he03298f_1' }"
+        'https://depot.galaxyproject.org/singularity/delly:1.1.3--h358d541_0' :
+        'quay.io/biocontainers/delly:1.1.3--h358d541_0' }"
 
     input:
     tuple val(meta), path(bam), path(bai)
diff --git a/tests/modules/delly/call/main.nf b/tests/modules/delly/call/main.nf
index f4583e05..caa311ae 100644
--- a/tests/modules/delly/call/main.nf
+++ b/tests/modules/delly/call/main.nf
@@ -4,12 +4,24 @@ nextflow.enable.dsl = 2
 
 include { DELLY_CALL } from '../../../../modules/delly/call/main.nf'
 
-workflow test_delly_call {
+workflow test_delly_call_bam {
     input     = [ [ id:'test' ], // meta map
                     file(params.test_data['homo_sapiens']['illumina']['test_paired_end_recalibrated_sorted_bam'], checkIfExists: true),
                     file(params.test_data['homo_sapiens']['illumina']['test_paired_end_recalibrated_sorted_bam_bai'], checkIfExists: true),
                 ]
 
+    fasta = file(params.test_data['homo_sapiens']['genome']['genome_21_fasta'], checkIfExists: true)
+    fai = file(params.test_data['homo_sapiens']['genome']['genome_21_fasta_fai'], checkIfExists: true)
+
+    DELLY_CALL ( input, fasta, fai )
+}
+
+workflow test_delly_call_cram {
+    input     = [ [ id:'test' ], // meta map
+                    file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_cram'], checkIfExists: true),
+                    file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_cram_crai'], checkIfExists: true),
+                ]
+
     fasta = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
     fai = file(params.test_data['homo_sapiens']['genome']['genome_fasta_fai'], checkIfExists: true)
 
diff --git a/tests/modules/delly/call/test.yml b/tests/modules/delly/call/test.yml
index a770d213..0d0ddfe8 100644
--- a/tests/modules/delly/call/test.yml
+++ b/tests/modules/delly/call/test.yml
@@ -1,9 +1,21 @@
-- name: delly call test_delly_call
-  command: nextflow run ./tests/modules/delly/call -entry test_delly_call -c ./tests/config/nextflow.config -c ./tests/modules/delly/call/nextflow.config
+- name: delly call test_delly_call_bam
+  command: nextflow run ./tests/modules/delly/call -entry test_delly_call_bam -c ./tests/config/nextflow.config -c ./tests/modules/delly/call/nextflow.config
   tags:
-    - delly
     - delly/call
+    - delly
   files:
     - path: output/delly/test.bcf
+      md5sum: 9d036b140c1bdeab08b7ee6781940fb4
+    - path: output/delly/test.bcf.csi
+      md5sum: c198abfc14584c5ac69c004057927e0b
+
+- name: delly call test_delly_call_cram
+  command: nextflow run ./tests/modules/delly/call -entry test_delly_call_cram -c ./tests/config/nextflow.config -c ./tests/modules/delly/call/nextflow.config
+  tags:
+    - delly/call
+    - delly
+  files:
+    - path: output/delly/test.bcf
+      md5sum: 6c1ec4cfb05ffe9fd93316d2209608ae
     - path: output/delly/test.bcf.csi
       md5sum: 19e0cdf06c415f4942f6d4dbd5fb7271