millironx/nf-core_modules
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drpatelh 2020-08-06 12:55:36 +01:00
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@ -52,7 +52,7 @@ We have written a helper command in the `nf-core/tools` package that allows you
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``` ```
3. Install the module in the pipeline directory: 3. Install the module in your pipeline directory:
```console ```console
$ nf-core modules install . fastqc $ nf-core modules install . fastqc
@ -71,32 +71,9 @@ We have written a helper command in the `nf-core/tools` package that allows you
INFO Downloaded 3 files to ./modules/nf-core/software/fastqc modules.py:97 INFO Downloaded 3 files to ./modules/nf-core/software/fastqc modules.py:97
``` ```
We have plans to add other utility commands to help developers install and maintain modules downloaded from this repository. We have plans to add other utility commands to help developers install and maintain modules downloaded from this repository. e.g.
```console ```console
$ nf-core modules --help
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nf-core/tools version 1.10.2
Usage: nf-core modules [OPTIONS] COMMAND [ARGS]...
Work with the nf-core/modules software wrappers.
Tools to manage DSL 2 nf-core/modules software wrapper imports.
Options:
-r, --repository TEXT GitHub repository hosting software wrapper modules.
-b, --branch TEXT Modules GitHub repo git branch to use.
--help Show this message and exit.
Commands: Commands:
list List available software modules. list List available software modules.
install Add a DSL2 software wrapper module to a pipeline. install Add a DSL2 software wrapper module to a pipeline.