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Rename gff to features

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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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Anders Goncalves da Silva 2021-02-15 19:53:30 -08:00 committed by GitHub
parent 8c483d4c6a
commit 4f8ab8bd69
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1 changed files with 4 additions and 4 deletions
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8
software/ivar/variants/main.nf
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@ -40,10 +40,10 @@ process IVAR_VARIANTS {
$bam | \\ $bam | \\
$save_mpileup \\ $save_mpileup \\
ivar variants \\ ivar variants \\
$options.args \\ $options.args \\
$gff \\ $features \\
-r $fasta \\ -r $fasta \\
-p $prefix -p $prefix
ivar version | head -n1 2>&1 | sed 's/^.*iVar version //g' > ${software}.version.txt ivar version | head -n1 2>&1 | sed 's/^.*iVar version //g' > ${software}.version.txt
""" """