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Remove deprecated tests

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This commit is contained in:
drpatelh 2020-08-07 15:55:23 +01:00
parent bd98988f23
commit 50a628ad0a
4 changed files with 0 additions and 124 deletions
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35
.github/workflows/deprecated/cutadapt.yml vendored
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@ -1,35 +0,0 @@
name: cutadapt
on:
push:
paths:
- software/cutadapt/**
- .github/workflows/cutadapt.yml
- tests
pull_request:
paths:
- software/cutadapt/**
- .github/workflows/cutadapt.yml
- tests
jobs:
run_ci_test:
runs-on: ubuntu-latest
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Test module with paired-end data
run: |
cd software/cutadapt/test/
nextflow run .
- name: Test module with single-end data
run: |
cd software/cutadapt/test/
nextflow run . --single_end

29
.github/workflows/deprecated/samtools_index.yml vendored
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@ -1,29 +0,0 @@
name: samtools index
on:
push:
paths:
- software/samtools/index/**
- .github/workflows/samtools_index.yml
- tests
pull_request:
paths:
- software/samtools/index/**
- .github/workflows/samtools_index.yml
- tests
jobs:
run_ci_test:
runs-on: ubuntu-latest
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
# Test the module
- run: nextflow run ./software/samtools/index/test/

29
.github/workflows/deprecated/samtools_sort.yml vendored
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@ -1,29 +0,0 @@
name: samtools sort
on:
push:
paths:
- software/samtools/sort**
- .github/workflows/samtools_sort.yml
- tests
pull_request:
paths:
- software/samtools/sort**
- .github/workflows/samtools_sort.yml
- tests
jobs:
run_ci_test:
runs-on: ubuntu-latest
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
# Test the module
- run: nextflow run ./software/samtools/sort/test/

31
.github/workflows/deprecated/tcoffee.yml vendored
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@ -1,31 +0,0 @@
name: tcoffee
on:
push:
paths:
- software/tcoffee/**
- .github/workflows/tcoffee.yml
- tests
pull_request:
paths:
- software/tcoffee/**
- .github/workflows/tcoffee.yml
- tests
jobs:
run_ci_test:
runs-on: ubuntu-latest
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
# Test the module
- run: |
cd software/tcoffee/test/
nextflow run .