From 5136ed29c4ce92eb32160ff7c5ad63ba243861fa Mon Sep 17 00:00:00 2001 From: Carpanzano Date: Mon, 2 May 2022 18:38:59 +0200 Subject: [PATCH] removed include and changed process name due to expected folder name before tokenize --- tests/modules/krona/ktimporttaxonomy/main.nf | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) diff --git a/tests/modules/krona/ktimporttaxonomy/main.nf b/tests/modules/krona/ktimporttaxonomy/main.nf index e48882b9..f8e9f485 100644 --- a/tests/modules/krona/ktimporttaxonomy/main.nf +++ b/tests/modules/krona/ktimporttaxonomy/main.nf @@ -2,9 +2,8 @@ nextflow.enable.dsl = 2 -include { KRONA_KTIMPORTTAXONOMY as TAXONOMY_READS } from '../../../../modules/krona/ktimporttaxonomy/main.nf' -include { KRONA_KTIMPORTTAXONOMY as TAXONOMY_REPORT } from '../../../../modules/krona/ktimporttaxonomy/main.nf' -include { KRONA_KRONADB as DOWNLOAD_DB } from '../../../../modules/krona/kronadb/main.nf' +include { KRONA_KTIMPORTTAXONOMY as KRONA_TAXONOMY_READS } from '../../../../modules/krona/ktimporttaxonomy/main.nf' +include { KRONA_KTIMPORTTAXONOMY as KRONA_TAXONOMY_REPORT } from '../../../../modules/krona/ktimporttaxonomy/main.nf' workflow test_krona_ktimporttaxonomy_reads { @@ -14,7 +13,7 @@ workflow test_krona_ktimporttaxonomy_reads { ] taxonomy = file("https://raw.githubusercontent.com/lescai/test-datasets/modules/data/genomics/sarscov2/metagenome/krona_taxonomy.tab") - TAXONOMY_READS ( input, taxonomy ) + KRONA_TAXONOMY_READS ( input, taxonomy ) } workflow test_krona_ktimporttaxonomy_report { @@ -25,5 +24,5 @@ workflow test_krona_ktimporttaxonomy_report { ] taxonomy = file("https://raw.githubusercontent.com/lescai/test-datasets/modules/data/genomics/sarscov2/metagenome/krona_taxonomy.tab") - TAXONOMY_REPORT ( input, taxonomy ) + KRONA_TAXONOMY_REPORT ( input, taxonomy ) }